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takeharu nagai  (Addgene inc)


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    Structured Review

    Addgene inc takeharu nagai
    Takeharu Nagai, supplied by Addgene inc, used in various techniques. Bioz Stars score: 92/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/takeharu+nagai/Kohinoor%2FpRSETb+(Plasmid+%2367770)/pmc12379806__SC-016-D5SC04491J-s002-65-42-44
    Average 92 stars, based on 3 article reviews
    takeharu nagai - by Bioz Stars, 2026-10
    92/100 stars

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    Related Articles

    Sequencing:

    Article Title: The Positive Switching Fluorescent Protein Padron2 Enables Live-Cell Reversible Saturable Optical Linear Fluorescence Transitions (RESOLFT) Nanoscopy without Sequential Illumination Steps.
    Article Snippet: Padron, Padron2, and Kohinoor were expressed in One Shot TOP10 Electrocomp E. coli (Thermo Fisher) from the pBAD/HisB expression system. .. To this end, the coding sequence for Kohinoor was PCR amplified from Kohinoor/pRSETb (forward primer, AGGGCTCGAGCATGAGTGTGATTAAACC; reverse primer, AACGAATTCTTACTTGGCCTGCCT), which was a gift from Takeharu Nagai (Addgene plasmid no. 67770), and inserted into pBAD/HisB with restriction enzymes EcoRI and XhoI. .. After 24 h at 37 °C (Padron2, Kohinoor) or 48 h at 30 °C (Padron) growth on LB agar with 0.02% (w/v) arabinose, cultures were kept at room temperature overnight to ensure full maturation.

    Article Title: Conformational Change of the Hairpin-Like-Structured Robo2 Ectodomain Allows Nell1/2 Binding
    Article Snippet: Masaki Miyaguchi1, Yoichi Nakanishi1, Andrés D. Maturana1, Kimihiko Mizutani2, and Tomoaki Niimi1* 1Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan 2Graduate School of Agriculture, Kyoto University, Kyoto, Japan *Correspondence to be addressed to : Tomoaki Niimi, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; tniimi@agr.nagoya-u.ac.jp; Tel.. 81- 52-789-5015 Abbreviations: ECD, ectodomain; EGFL, epidermal growth factor-like; FNIII, fibronectin type III; FRET, Förster resonance energy transfer; Ig, immunoglobulin-like; LG, laminin G; NELL, neural epidermal growth factor-like (NEL)-like; Robo, Roundabout; SEC, size exclusion chromatography; VWC, von Willebrand factor type C Electronic copy available at: https://ssrn.com/abstract=4115314 2

    Article Title: Conformational Change of the Hairpin-like-structured Robo2 Ectodomain Allows NELL1/2 Binding.
    Article Snippet: .. Gamillus/ pcDNA3 was a gift from Takeharu Nagai (Addgene plasmid # 124837).38 pLifeAct- mTurquoise2 was a gift from Dorus Gadella (Addgene plasmid # 36201).37 Deletion mutants lacking the coding sequence for both the Ig1 domain (residues 43–144) and the FNIII3 domain (residues 740–826) or only Ig1 domain were generated by inverse PCR and designated as Gam:Rob o2-ECD/DIg1&FNIII3:mTq2 and Gam:Robo2ECD/DIg1:mTq2, respectively. ..

    Polymerase Chain Reaction:

    Article Title: The Positive Switching Fluorescent Protein Padron2 Enables Live-Cell Reversible Saturable Optical Linear Fluorescence Transitions (RESOLFT) Nanoscopy without Sequential Illumination Steps.
    Article Snippet: Padron, Padron2, and Kohinoor were expressed in One Shot TOP10 Electrocomp E. coli (Thermo Fisher) from the pBAD/HisB expression system. .. To this end, the coding sequence for Kohinoor was PCR amplified from Kohinoor/pRSETb (forward primer, AGGGCTCGAGCATGAGTGTGATTAAACC; reverse primer, AACGAATTCTTACTTGGCCTGCCT), which was a gift from Takeharu Nagai (Addgene plasmid no. 67770), and inserted into pBAD/HisB with restriction enzymes EcoRI and XhoI. .. After 24 h at 37 °C (Padron2, Kohinoor) or 48 h at 30 °C (Padron) growth on LB agar with 0.02% (w/v) arabinose, cultures were kept at room temperature overnight to ensure full maturation.

    Amplification:

    Article Title: The Positive Switching Fluorescent Protein Padron2 Enables Live-Cell Reversible Saturable Optical Linear Fluorescence Transitions (RESOLFT) Nanoscopy without Sequential Illumination Steps.
    Article Snippet: Padron, Padron2, and Kohinoor were expressed in One Shot TOP10 Electrocomp E. coli (Thermo Fisher) from the pBAD/HisB expression system. .. To this end, the coding sequence for Kohinoor was PCR amplified from Kohinoor/pRSETb (forward primer, AGGGCTCGAGCATGAGTGTGATTAAACC; reverse primer, AACGAATTCTTACTTGGCCTGCCT), which was a gift from Takeharu Nagai (Addgene plasmid no. 67770), and inserted into pBAD/HisB with restriction enzymes EcoRI and XhoI. .. After 24 h at 37 °C (Padron2, Kohinoor) or 48 h at 30 °C (Padron) growth on LB agar with 0.02% (w/v) arabinose, cultures were kept at room temperature overnight to ensure full maturation.

    Plasmid Preparation:

    Article Title: The Positive Switching Fluorescent Protein Padron2 Enables Live-Cell Reversible Saturable Optical Linear Fluorescence Transitions (RESOLFT) Nanoscopy without Sequential Illumination Steps.
    Article Snippet: Padron, Padron2, and Kohinoor were expressed in One Shot TOP10 Electrocomp E. coli (Thermo Fisher) from the pBAD/HisB expression system. .. To this end, the coding sequence for Kohinoor was PCR amplified from Kohinoor/pRSETb (forward primer, AGGGCTCGAGCATGAGTGTGATTAAACC; reverse primer, AACGAATTCTTACTTGGCCTGCCT), which was a gift from Takeharu Nagai (Addgene plasmid no. 67770), and inserted into pBAD/HisB with restriction enzymes EcoRI and XhoI. .. After 24 h at 37 °C (Padron2, Kohinoor) or 48 h at 30 °C (Padron) growth on LB agar with 0.02% (w/v) arabinose, cultures were kept at room temperature overnight to ensure full maturation.

    Article Title: The linker histone chaperone Prothymosin α (PTMA) is essential for efficient DNA damage repair and the recruitment of PARP1.
    Article Snippet: Plasmid pPSmOrange was a gift from Vladislav Verkhusha (Addgene plasmid # 31898; RRID:31898). .. Plasmid SuperNova/pRSETB was a gift from Takeharu Nagai (Addgene plasmid # 53234; RRID: 53234).Plasmids were constructed by standard subcloning procedures and verified by DNA sequencing (Eurofins Genomics). ..

    Article Title: Conformational Change of the Hairpin-Like-Structured Robo2 Ectodomain Allows Nell1/2 Binding
    Article Snippet: Masaki Miyaguchi1, Yoichi Nakanishi1, Andrés D. Maturana1, Kimihiko Mizutani2, and Tomoaki Niimi1* 1Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan 2Graduate School of Agriculture, Kyoto University, Kyoto, Japan *Correspondence to be addressed to : Tomoaki Niimi, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; tniimi@agr.nagoya-u.ac.jp; Tel.. 81- 52-789-5015 Abbreviations: ECD, ectodomain; EGFL, epidermal growth factor-like; FNIII, fibronectin type III; FRET, Förster resonance energy transfer; Ig, immunoglobulin-like; LG, laminin G; NELL, neural epidermal growth factor-like (NEL)-like; Robo, Roundabout; SEC, size exclusion chromatography; VWC, von Willebrand factor type C Electronic copy available at: https://ssrn.com/abstract=4115314 2

    Article Title: Volumetric imaging of fast cellular dynamics with deep learning enhanced bioluminescence microscopy
    Article Snippet: .. CeNL-Clathrin_pEGFP, ReNL-Actin_pcDNA3, and Lyn-OeNL_pcDNA3 was a gift from Takeharu Nagai (Addgene plasmid # 89540, # 89531, # 89528). ..

    Article Title: Conformational Change of the Hairpin-like-structured Robo2 Ectodomain Allows NELL1/2 Binding.
    Article Snippet: .. Gamillus/ pcDNA3 was a gift from Takeharu Nagai (Addgene plasmid # 124837).38 pLifeAct- mTurquoise2 was a gift from Dorus Gadella (Addgene plasmid # 36201).37 Deletion mutants lacking the coding sequence for both the Ig1 domain (residues 43–144) and the FNIII3 domain (residues 740–826) or only Ig1 domain were generated by inverse PCR and designated as Gam:Rob o2-ECD/DIg1&FNIII3:mTq2 and Gam:Robo2ECD/DIg1:mTq2, respectively. ..

    Article Title: Ultrafast photophysics of a positive reversibly switchable fluorescent protein
    Article Snippet: .. Spectra were calibrated relative to the IR transmission of a pure polystyrene standard sample placed at the sample position. f.) Expression and Purification of Kohinoor The pRSETb plasmid that encoded the gene of Kohinoor with the N-terminal hexahistidine-tag was a gift from Takeharu Nagai (Addgene plasmid # 67770). .. The E.Coli Bl21 (DE3) competent cells were transformed with the pRSetb Kohinoor plasmid and plated on an LB-Agar plate containing 100 μg/mL of ampicillin.

    Construct:

    Article Title: The linker histone chaperone Prothymosin α (PTMA) is essential for efficient DNA damage repair and the recruitment of PARP1.
    Article Snippet: Plasmid pPSmOrange was a gift from Vladislav Verkhusha (Addgene plasmid # 31898; RRID:31898). .. Plasmid SuperNova/pRSETB was a gift from Takeharu Nagai (Addgene plasmid # 53234; RRID: 53234).Plasmids were constructed by standard subcloning procedures and verified by DNA sequencing (Eurofins Genomics). ..

    Article Title: Increased burden of rare risk variants across gene expression networks predisposes to sporadic Parkinson’s disease
    Article Snippet: Cy3-tagged siRNA (#SIC003–1NMOL, Sigma) was used as a positive control for transfection. .. ATeam1.03-nD/nA/pcDNA3 was a gift from Takeharu Nagai (Addgene construct # 51958; http://n2t.net/addgene:51958 ; RRID: Addgene_51958). pcDNA3-GFP-LC3-RFP-LC3ΔG was a gift from Noboru Mizushima (Addgene construct # 168997; http://n2t.net/addgene:168997 ; RRID:Addgene_168997). pT7–7 αSyn WT was a gift from Hilal Lashuel (Addgene construct # 36046; http://n2t.net/addgene:36046 ; RRID:Addgene_36046). .. Cy3-tagged siRNA (#SIC003–1NMOL, Sigma) was used as a positive control for transfection.

    Article Title: Increased burden of rare risk variants across gene expression networks predisposes to sporadic Parkinson's disease.
    Article Snippet: Cy3-tagged siRNA (#SIC003-1NMOL, Sigma) was used as a positive control for transfection. .. Constructs ATeam1.03-nD/nA/pcDNA3 was a gift from Takeharu Nagai (Addgene construct # 51958; http://n2t.net/addgene:51958; RRID: Addgene_51958). pcDNA3-GFP-LC3-RFP-LC3ΔG was a gift from Noboru Mizushima (Addgene construct # 168997; http://n2t. net/addgene:168997; RRID:Addgene_168997). pT7-7 αSyn WT was a gift from Hilal Lashuel (Addgene construct # 36046; http:// n2t.net/addgene:36046; RRID:Addgene_36046). .. Chloroquine treatment Cells were treated with 50uM of Chloroquine diphosphate salt (#C6628-25G, Sigma) in DMEM without phenol plus 10% FBS, 1% glutamax and 1% penstrep at 48h post-doxycycline induction for 2-5h.

    Subcloning:

    Article Title: The linker histone chaperone Prothymosin α (PTMA) is essential for efficient DNA damage repair and the recruitment of PARP1.
    Article Snippet: Plasmid pPSmOrange was a gift from Vladislav Verkhusha (Addgene plasmid # 31898; RRID:31898). .. Plasmid SuperNova/pRSETB was a gift from Takeharu Nagai (Addgene plasmid # 53234; RRID: 53234).Plasmids were constructed by standard subcloning procedures and verified by DNA sequencing (Eurofins Genomics). ..

    DNA Sequencing:

    Article Title: The linker histone chaperone Prothymosin α (PTMA) is essential for efficient DNA damage repair and the recruitment of PARP1.
    Article Snippet: Plasmid pPSmOrange was a gift from Vladislav Verkhusha (Addgene plasmid # 31898; RRID:31898). .. Plasmid SuperNova/pRSETB was a gift from Takeharu Nagai (Addgene plasmid # 53234; RRID: 53234).Plasmids were constructed by standard subcloning procedures and verified by DNA sequencing (Eurofins Genomics). ..

    Generated:

    Article Title: Conformational Change of the Hairpin-Like-Structured Robo2 Ectodomain Allows Nell1/2 Binding
    Article Snippet: Masaki Miyaguchi1, Yoichi Nakanishi1, Andrés D. Maturana1, Kimihiko Mizutani2, and Tomoaki Niimi1* 1Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan 2Graduate School of Agriculture, Kyoto University, Kyoto, Japan *Correspondence to be addressed to : Tomoaki Niimi, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; tniimi@agr.nagoya-u.ac.jp; Tel.. 81- 52-789-5015 Abbreviations: ECD, ectodomain; EGFL, epidermal growth factor-like; FNIII, fibronectin type III; FRET, Förster resonance energy transfer; Ig, immunoglobulin-like; LG, laminin G; NELL, neural epidermal growth factor-like (NEL)-like; Robo, Roundabout; SEC, size exclusion chromatography; VWC, von Willebrand factor type C Electronic copy available at: https://ssrn.com/abstract=4115314 2

    Article Title: Conformational Change of the Hairpin-like-structured Robo2 Ectodomain Allows NELL1/2 Binding.
    Article Snippet: .. Gamillus/ pcDNA3 was a gift from Takeharu Nagai (Addgene plasmid # 124837).38 pLifeAct- mTurquoise2 was a gift from Dorus Gadella (Addgene plasmid # 36201).37 Deletion mutants lacking the coding sequence for both the Ig1 domain (residues 43–144) and the FNIII3 domain (residues 740–826) or only Ig1 domain were generated by inverse PCR and designated as Gam:Rob o2-ECD/DIg1&FNIII3:mTq2 and Gam:Robo2ECD/DIg1:mTq2, respectively. ..

    Inverse PCR:

    Article Title: Conformational Change of the Hairpin-Like-Structured Robo2 Ectodomain Allows Nell1/2 Binding
    Article Snippet: Masaki Miyaguchi1, Yoichi Nakanishi1, Andrés D. Maturana1, Kimihiko Mizutani2, and Tomoaki Niimi1* 1Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan 2Graduate School of Agriculture, Kyoto University, Kyoto, Japan *Correspondence to be addressed to : Tomoaki Niimi, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan; tniimi@agr.nagoya-u.ac.jp; Tel.. 81- 52-789-5015 Abbreviations: ECD, ectodomain; EGFL, epidermal growth factor-like; FNIII, fibronectin type III; FRET, Förster resonance energy transfer; Ig, immunoglobulin-like; LG, laminin G; NELL, neural epidermal growth factor-like (NEL)-like; Robo, Roundabout; SEC, size exclusion chromatography; VWC, von Willebrand factor type C Electronic copy available at: https://ssrn.com/abstract=4115314 2

    Article Title: Conformational Change of the Hairpin-like-structured Robo2 Ectodomain Allows NELL1/2 Binding.
    Article Snippet: .. Gamillus/ pcDNA3 was a gift from Takeharu Nagai (Addgene plasmid # 124837).38 pLifeAct- mTurquoise2 was a gift from Dorus Gadella (Addgene plasmid # 36201).37 Deletion mutants lacking the coding sequence for both the Ig1 domain (residues 43–144) and the FNIII3 domain (residues 740–826) or only Ig1 domain were generated by inverse PCR and designated as Gam:Rob o2-ECD/DIg1&FNIII3:mTq2 and Gam:Robo2ECD/DIg1:mTq2, respectively. ..

    Transmission Assay:

    Article Title: Ultrafast photophysics of a positive reversibly switchable fluorescent protein
    Article Snippet: .. Spectra were calibrated relative to the IR transmission of a pure polystyrene standard sample placed at the sample position. f.) Expression and Purification of Kohinoor The pRSETb plasmid that encoded the gene of Kohinoor with the N-terminal hexahistidine-tag was a gift from Takeharu Nagai (Addgene plasmid # 67770). .. The E.Coli Bl21 (DE3) competent cells were transformed with the pRSetb Kohinoor plasmid and plated on an LB-Agar plate containing 100 μg/mL of ampicillin.

    Expressing:

    Article Title: Ultrafast photophysics of a positive reversibly switchable fluorescent protein
    Article Snippet: .. Spectra were calibrated relative to the IR transmission of a pure polystyrene standard sample placed at the sample position. f.) Expression and Purification of Kohinoor The pRSETb plasmid that encoded the gene of Kohinoor with the N-terminal hexahistidine-tag was a gift from Takeharu Nagai (Addgene plasmid # 67770). .. The E.Coli Bl21 (DE3) competent cells were transformed with the pRSetb Kohinoor plasmid and plated on an LB-Agar plate containing 100 μg/mL of ampicillin.

    Purification:

    Article Title: Ultrafast photophysics of a positive reversibly switchable fluorescent protein
    Article Snippet: .. Spectra were calibrated relative to the IR transmission of a pure polystyrene standard sample placed at the sample position. f.) Expression and Purification of Kohinoor The pRSETb plasmid that encoded the gene of Kohinoor with the N-terminal hexahistidine-tag was a gift from Takeharu Nagai (Addgene plasmid # 67770). .. The E.Coli Bl21 (DE3) competent cells were transformed with the pRSetb Kohinoor plasmid and plated on an LB-Agar plate containing 100 μg/mL of ampicillin.



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    https://www.bioz.com/product/takeharu+nagai/Kohinoor%2FpRSETb+(Plasmid+%2367770)/pmc12379806__SC-016-D5SC04491J-s002-65-42-44
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